Package com.actelion.research.gui.editor

Class GenericDrawArea

java.lang.Object

com.actelion.research.gui.editor.GenericDrawArea

All Implemented Interfaces:

DialogEventConsumer, GenericKeyListener, GenericMouseListener

public class GenericDrawArea
extends java.lang.Object
implements DialogEventConsumer, GenericKeyListener, GenericMouseListener

Field Summary

Fields

Modifier and Type	Field	Description
static int	MODE_DRAWING_OBJECTS
static int	MODE_MARKUSH_STRUCTURE
static int	MODE_MULTIPLE_FRAGMENTS
static int	MODE_REACTION
protected static int	UPDATE_CHECK_COORDS
protected static int	UPDATE_CHECK_VIEW
protected static int	UPDATE_INVENT_COORDS
protected static int	UPDATE_NONE
protected static int	UPDATE_REDRAW
protected static int	UPDATE_SCALE_COORDS
protected static int	UPDATE_SCALE_COORDS_USE_FRAGMENTS

Constructor Summary

Constructors

Constructor	Description
GenericDrawArea(StereoMolecule mol, int mode, GenericDialogHelper helper, GenericCanvas canvas)

Method Summary

Modifier and Type	Method	Description
void	addDrawAreaListener(DrawAreaListener l)
boolean	addPastedOrDropped(StereoMolecule mol, java.awt.Point p)
protected void	buttonPressed(int button)
static java.awt.Color	chainHiliteColor()
void	clearAll()
void	dialogEventHappened(DialogEvent e)
int	getDisplayMode()
DrawingObjectList	getDrawingObjects()
StereoMolecule[]	getFragments()
int	getHiliteAtom()
int	getHiliteBond()
MarkushStructure	getMarkushStructure()
int	getMode()
StereoMolecule	getMolecule()
Reaction	getReaction()
Reaction	getReactionAndDrawings()
boolean	isAtomColorSupported()
void	keyActionHappened(GenericKeyEvent e)
static java.awt.Color	lassoColor()
static java.awt.Color	mapToolColor()
void	moleculeChanged()	Use this to inform the JDrawArea after changing its molecule from outside.
void	moleculeChanged(boolean userChange)	Ideally don't use this from outside JDrawArea.
void	mouseActionHappened(GenericMouseEvent e)
void	paintContent(GenericDrawContext context)
protected void	restoreState()
static java.awt.Color	selectionColor()
void	setAllowQueryFeatures(boolean allow)	If set to false then any query features will be removed from the molecule and any functionality that allows to define atom- or bond-query features won't be available.
void	setAtomColorSupported(boolean acs)
void	setAtomText(java.lang.String[] atomText)	Defines additional atom text to be displayed in top right position of some/all atom label.
void	setClipboardHandler(IClipboardHandler h)	Call this after initialization to get clipboard support
void	setDisplayMode(int dMode)
void	setDrawingObjects(DrawingObjectList drawingObjectList)
void	setFragments(StereoMolecule[] fragment)
void	setHiliteBondSet(int[] bondSet)
void	setMarkushStructure(MarkushStructure markush)
void	setMolecule(StereoMolecule theMolecule)
void	setReaction(Reaction rxn)
static void	setReactionMapper(IReactionMapper mapper)
void	setReactionMode(boolean rxn)
protected void	setUpdateMode(int mode)
void	showHelpDialog()
void	storeState()
void	toolChanged(int newTool)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MODE_MULTIPLE_FRAGMENTS

public static final int MODE_MULTIPLE_FRAGMENTS

See Also:

Constant Field Values

MODE_MARKUSH_STRUCTURE

public static final int MODE_MARKUSH_STRUCTURE

See Also:

Constant Field Values

MODE_REACTION

public static final int MODE_REACTION

See Also:

Constant Field Values

MODE_DRAWING_OBJECTS

public static final int MODE_DRAWING_OBJECTS

See Also:

Constant Field Values

UPDATE_NONE

protected static final int UPDATE_NONE

See Also:

Constant Field Values

UPDATE_REDRAW

protected static final int UPDATE_REDRAW

See Also:

Constant Field Values

UPDATE_CHECK_VIEW

protected static final int UPDATE_CHECK_VIEW

See Also:

Constant Field Values

UPDATE_CHECK_COORDS

protected static final int UPDATE_CHECK_COORDS

See Also:

Constant Field Values

UPDATE_SCALE_COORDS

protected static final int UPDATE_SCALE_COORDS

See Also:

Constant Field Values

UPDATE_SCALE_COORDS_USE_FRAGMENTS

protected static final int UPDATE_SCALE_COORDS_USE_FRAGMENTS

See Also:

Constant Field Values

UPDATE_INVENT_COORDS

protected static final int UPDATE_INVENT_COORDS

See Also:

Constant Field Values

Constructor Detail

GenericDrawArea

public GenericDrawArea(StereoMolecule mol,
                       int mode,
                       GenericDialogHelper helper,
                       GenericCanvas canvas)

Parameters:

mol - an empty or valid stereo molecule

mode - 0 or a meaningful combination of the mode flags, e.g. MODE_REACTION | MODE_DRAWING_OBJECTS

Method Detail

setClipboardHandler

public void setClipboardHandler(IClipboardHandler h)

Call this after initialization to get clipboard support

Parameters:

h -

setReactionMapper

public static void setReactionMapper(IReactionMapper mapper)

paintContent

public void paintContent(GenericDrawContext context)

lassoColor

public static java.awt.Color lassoColor()

selectionColor

public static java.awt.Color selectionColor()

mapToolColor

public static java.awt.Color mapToolColor()

chainHiliteColor

public static java.awt.Color chainHiliteColor()

addDrawAreaListener

public void addDrawAreaListener(DrawAreaListener l)

buttonPressed

protected void buttonPressed(int button)

clearAll

public void clearAll()

toolChanged

public void toolChanged(int newTool)

dialogEventHappened

public void dialogEventHappened(DialogEvent e)

Specified by:

dialogEventHappened in interface DialogEventConsumer

addPastedOrDropped

public boolean addPastedOrDropped(StereoMolecule mol,
                                  java.awt.Point p)

mouseActionHappened

public void mouseActionHappened(GenericMouseEvent e)

Specified by:

mouseActionHappened in interface GenericMouseListener

showHelpDialog

public void showHelpDialog()

keyActionHappened

public void keyActionHappened(GenericKeyEvent e)

Specified by:

keyActionHappened in interface GenericKeyListener

restoreState

protected void restoreState()

storeState

public void storeState()

moleculeChanged

public void moleculeChanged()

Use this to inform the JDrawArea after changing its molecule from outside.

moleculeChanged

public void moleculeChanged(boolean userChange)

Ideally don't use this from outside JDrawArea. Use moleculeChanged() instead.

Parameters:

userChange - is true if the change was done within the editor

getMolecule

public StereoMolecule getMolecule()

setMolecule

public void setMolecule(StereoMolecule theMolecule)

getFragments

public StereoMolecule[] getFragments()

setFragments

public void setFragments(StereoMolecule[] fragment)

getReaction

public Reaction getReaction()

Returns:

mapped reaction with absolute coordinates, but without drawing objects

getReactionAndDrawings

public Reaction getReactionAndDrawings()

Returns:

mapped reaction with absolute coordinates and drawing objects

setReaction

public void setReaction(Reaction rxn)

getMarkushStructure

public MarkushStructure getMarkushStructure()

setMarkushStructure

public void setMarkushStructure(MarkushStructure markush)

getDisplayMode

public int getDisplayMode()

setDisplayMode

public void setDisplayMode(int dMode)

setAllowQueryFeatures

public void setAllowQueryFeatures(boolean allow)

If set to false then any query features will be removed from the molecule and any functionality that allows to define atom- or bond-query features won't be available. This feature is only relevant if the molecule is a fragment.

Parameters:

allow - if false, then query feature editing is not allowed, even for molecules being a fragment

setAtomText

public void setAtomText(java.lang.String[] atomText)

Defines additional atom text to be displayed in top right position of some/all atom label. If the atom is charged, then the atom text follows the charge information. If using atom text make sure to update it accordingly, if atom indexes change due to molecule changes. Atom text is not supported for MODE_REACTION, MODE_MULTIPLE_FRAGMENTS or MODE_MARKUSH_STRUCTURE.

Parameters:

atomText - String[] matching atom indexes (may contain null entries)

getDrawingObjects

public DrawingObjectList getDrawingObjects()

setDrawingObjects

public void setDrawingObjects(DrawingObjectList drawingObjectList)

getMode

public int getMode()

getHiliteAtom

public int getHiliteAtom()

getHiliteBond

public int getHiliteBond()

setHiliteBondSet

public void setHiliteBondSet(int[] bondSet)

setReactionMode

public void setReactionMode(boolean rxn)

setUpdateMode

protected void setUpdateMode(int mode)

isAtomColorSupported

public boolean isAtomColorSupported()

setAtomColorSupported

public void setAtomColorSupported(boolean acs)