Uses of Class ij.ImagePlus (ImageJ API)

Packages that use ImagePlus

Package

Description

ij.gui

Uses of ImagePlus in ij

Subclasses of ImagePlus in ij

Modifier and Type

Class

Description

class

CompositeImage

Methods in ij that return ImagePlus

Modifier and Type

Method

Description

static ImagePlus

IJ.createHyperStack(String title, int width, int height, int channels, int slices, int frames, int bitdepth)

Creates a new hyperstack.

ImagePlus

ImagePlus.createHyperStack(String title, int channels, int slices, int frames, int bitDepth)

This method has been replaced by IJ.createHyperStack().

static ImagePlus

IJ.createImage(String title, int width, int height, int depth, int bitdepth)

Creates a new image.

static ImagePlus

IJ.createImage(String title, String type, int width, int height, int depth)

Creates a new imagePlus.

static ImagePlus

IJ.createImage(String title, String type, int width, int height, int channels, int slices, int frames)

Creates a new hyperstack.

ImagePlus

ImagePlus.createImagePlus()

Returns a new ImagePlus with this image's attributes (e.g.

ImagePlus

ImagePlus.crop()

Returns a copy this image or stack slice, cropped if there is an ROI.

ImagePlus[]

ImagePlus.crop(Roi[] rois)

Multi-roi cropping with default "slice" option.

ImagePlus[]

ImagePlus.crop(Roi[] rois, String options)

Returns an array of cropped images based on the provided list of rois.

ImagePlus

ImagePlus.crop(String options)

Returns a cropped copy this image or stack, where 'options' can be "stack", "slice", "whole-slice" or a range (e.g., "20-30").

ImagePlus

ImagePlus.duplicate()

Returns a copy of this image or stack.

ImagePlus

ImagePlus.flatten()

Returns a "flattened" version of this image, or stack slice, in RGB format.

static ImagePlus

ImagePlus.getClipboard()

Returns the internal clipboard or null if the internal clipboard is empty.

static ImagePlus

WindowManager.getCurrentImage()

Returns a reference to the active image or null if there isn't one.

static ImagePlus

IJ.getImage()

Returns a reference to the active image, or displays an error message and aborts the plugin or macro if no images are open.

static ImagePlus

IJ.getImage(Interpreter interpreter)

The macro interpreter uses this method to call getImage().

static ImagePlus

WindowManager.getImage(int imageID)

For IDs less than zero, returns the ImagePlus with the specified ID.

static ImagePlus

WindowManager.getImage(String title)

Returns the first image that has the specified title or null if it is not found.

static ImagePlus

WindowManager.getTempCurrentImage()

Returns the temporary current image for this thread, or null.

static ImagePlus

IJ.openImage()

Opens an image using a file open dialog and returns it as an ImagePlus object.

static ImagePlus

IJ.openImage(String path)

Opens the specified file as a tiff, bmp, dicom, fits, pgm, gif, jpeg or text image and returns an ImagePlus object if successful.

static ImagePlus

IJ.openImage(String path, int n)

Opens the nth image of the specified tiff stack.

static ImagePlus

IJ.openVirtual(String path)

Opens the specified tiff file as a virtual stack.

ImagePlus

ImagePlus.resize(int dstWidth, int dstHeight, int dstDepth, String options)

Returns a scaled copy of this image or ROI, where the 'options' string can contain 'none', 'bilinear'.

ImagePlus

ImagePlus.resize(int dstWidth, int dstHeight, String options)

Returns a scaled copy of this image or ROI, where the 'options' string can contain 'none', 'bilinear'.

Methods in ij with parameters of type ImagePlus

Modifier and Type

Method

Description

void

ImagePlus.copyAttributes(ImagePlus imp)

Used internally.

void

CompositeImage.copyLuts(ImagePlus imp)

Copies the LUTs and display mode of 'imp' to this image.

void

ImagePlus.copyScale(ImagePlus imp)

Copies the calibration of the specified image to this image.

static ImageStack

ImageStack.create(ImagePlus[] images)

Creates an ImageStack from an ImagePlus array.

static void

IJ.doCommand(ImagePlus imp, String command)

Runs a menu command on a separete thread, using the specified image.

static int

IJ.doWand(ImagePlus img, int x, int y, double tolerance, String mode)

This version of doWand adds an ImagePlus argument.

static String

WindowManager.getUniqueName(ImagePlus imp, String name)

static double

IJ.getValue(ImagePlus imp, String measurement)

Returns a measurement result, where 'measurement' is "Area", "Mean", "StdDev", "Mode", "Min", "Max", "X", "Y", "XM", "YM", "Perim.", "BX", "BY", "Width", "Height", "Major", "Minor", "Angle", "Circ.", "Feret", "IntDen", "Median", "Skew", "Kurt", "%Area", "RawIntDen", "Ch", "Slice", "Frame", "FeretX", "FeretY", "FeretAngle", "MinFeret", "AR", "Round", "Solidity", "MinThr" or "MaxThr".

void

ImageListener.imageClosed(ImagePlus imp)

void

ImageListener.imageOpened(ImagePlus imp)

void

ImageListener.imageUpdated(ImagePlus imp)

static void

IJ.resetMinAndMax(ImagePlus img)

Resets the minimum and maximum displayed pixel values of the specified image to be the same as the min and max pixel values.

static void

IJ.resetThreshold(ImagePlus img)

Disables thresholding on the specified image.

static void

IJ.run(ImagePlus imp, String command, String options)

Runs an ImageJ command using the specified image and options.

static Object

IJ.runPlugIn(ImagePlus imp, String className, String arg)

Runs the specified plugin using the specified image.

static void

IJ.save(ImagePlus imp, String path)

Saves the specified image, lookup table or selection to the specified file path.

static void

IJ.saveAs(ImagePlus imp, String format, String path)

static boolean

IJ.saveAsTiff(ImagePlus imp, String path)

Saves the specified image in TIFF format.

static void

Undo.saveOverlay(ImagePlus imp)

static void

IJ.setAutoThreshold(ImagePlus imp, String method)

Replaced by ImagePlus.setAutoThreshold().

void

ImagePlus.setImage(ImagePlus imp)

Replaces this image with the specified ImagePlus.

static void

IJ.setMinAndMax(ImagePlus img, double min, double max)

Sets the display range (minimum and maximum displayed pixel values) of the specified image.

static void

IJ.setRawThreshold(ImagePlus img, double lowerThreshold, double upperThreshold)

This is a version of setThreshold() that uses raw (uncalibrated) values in the range 0-255 for 8-bit images and 0-65535 for 16-bit images and the "Red" LUT display mode.

static void

IJ.setRawThreshold(ImagePlus img, double lowerThreshold, double upperThreshold, String displayMode)

This is a version of setThreshold() that always uses raw (uncalibrated) values in the range 0-255 for 8-bit images and 0-65535 for 16-bit images.

static void

WindowManager.setTempCurrentImage(ImagePlus img)

Makes the specified image temporarily the active image for this thread.

static void

WindowManager.setTempCurrentImage(Thread thread, ImagePlus img)

Sets a temporary image for the specified thread.

static void

IJ.setThreshold(ImagePlus img, double lowerThreshold, double upperThreshold)

Sets the lower and upper threshold levels of the specified image.

static void

IJ.setThreshold(ImagePlus img, double lowerThreshold, double upperThreshold, String displayMode)

Sets the lower and upper threshold levels of the specified image and updates the display using the specified displayMode ("Red", "Black invalid input: '&' White", "Over/Under" or "No Update").

static void

Undo.setup(int what, ImagePlus imp)

static int

IJ.setupDialog(ImagePlus imp, int flags)

Displays a "Process all images?" dialog.

static void

IJ.showTime(ImagePlus imp, long start, String str)

static void

IJ.showTime(ImagePlus imp, long start, String str, int nslices)

static String

IJ.time(ImagePlus imp, long startNanoTime)

Experimental

static void

Menus.updateWindowMenuItem(ImagePlus imp, String oldLabel, String newLabel)

Changes the name of an item in the Window menu.

Constructors in ij with parameters of type ImagePlus

Modifier

Constructor

Description

CompositeImage(ImagePlus imp)

CompositeImage(ImagePlus imp, int mode)

Executer(String cmd, ImagePlus imp)

Create an Executer that runs the specified menu command in a separate thread using the specified image, or using the active image if 'imp' is null.
Uses of ImagePlus in ij.gui

Subclasses of ImagePlus in ij.gui

Modifier and Type

Class

Description

class

HistogramPlot

Fields in ij.gui declared as ImagePlus

Modifier and Type

Field

Description

protected ImagePlus

Roi.clipboard

protected ImagePlus

ImageCanvas.imp

protected ImagePlus

ImageWindow.imp

protected ImagePlus

ProfilePlot.imp

protected ImagePlus

Roi.imp

Methods in ij.gui that return ImagePlus

Modifier and Type

Method

Description

static ImagePlus

NewImage.createByteImage(String title, int width, int height, int slices, int options)

static ImagePlus

NewImage.createFloatImage(String title, int width, int height, int slices, int options)

static ImagePlus

NewImage.createImage(String title, int width, int height, int nSlices, int bitDepth, int options)

static ImagePlus

NewImage.createIntImage(String title, int width, int height, int slices, int options)

static ImagePlus

NewImage.createRGBImage(String title, int width, int height, int slices, int options)

static ImagePlus

NewImage.createShortImage(String title, int width, int height, int slices, int options)

Creates an unsigned short image.

static ImagePlus

NewImage.createUnsignedShortImage(String title, int width, int height, int slices, int options)

Deprecated.
Short images are always unsigned.

ImagePlus

ImageCanvas.getImage()

Returns the ImagePlus object that is associated with this ImageCanvas.

ImagePlus

Roi.getImage()

Returns the ImagePlus associated with this ROI, or null.

ImagePlus

ImageWindow.getImagePlus()

ImagePlus

Plot.getImagePlus()

Returns the plot as an ImagePlus.

ImagePlus

GenericDialog.getNextImage()

ImagePlus

PlotMaker.getSourceImage()

Returns the ImagePlus used to generate the profile plots.

ImagePlus

Plot.makeHighResolution(String title, float scale, boolean antialiasedText, boolean showIt)

Creates a new high-resolution plot by scaling it and displays that plot if showIt is true.

Methods in ij.gui with parameters of type ImagePlus

Modifier and Type

Method

Description

void

Roi.abortModification(ImagePlus imp)

Aborts constructing or modifying the roi (called by the ImageJ class on escape)

void

GenericDialog.addImage(ImagePlus image)

Adds an image to the dialog.

void

PointRoi.addPoint(ImagePlus imp, double ox, double oy)

Adds a point to this PointRoi.

void

PointRoi.addUserPoint(ImagePlus imp, double ox, double oy)

void

HistogramPlot.draw(ImagePlus imp, int bins, double histMin, double histMax, int yMax)

Plots a histogram using the specified title, number of bins and histogram range.

void

HistogramPlot.draw(ImagePlus imp, ImageStatistics stats)

Draws the histogram using the specified title and ImageStatistics.

void

HistogramPlot.draw(String title, ImagePlus imp, int bins)

Plots a histogram using the specified title and number of bins.

void

Overlay.fill(ImagePlus imp, Color foreground, Color background)

Fills all the ROIs in this overlay with 'foreground' after clearing the the image to 'background' if it is not null.

static String

ImageWindow.getImageSize(ImagePlus imp)

Roi

Roi.getInverse(ImagePlus imp)

Returns the inverted roi, or null if this is not an area roi or cannot be converted to a ShapeRoi.

String

TextRoi.getMacroCode(String cmd, ImagePlus imp)

Used by the Recorder for recording the text tool.

void

HistogramWindow.imageClosed(ImagePlus imp)

void

PlotWindow.imageClosed(ImagePlus imp)

For live plots, if either the source image or this image are closed, exit live mode

void

HistogramWindow.imageOpened(ImagePlus imp)

void

PlotWindow.imageOpened(ImagePlus imp)

void

HistogramWindow.imageUpdated(ImagePlus imp)

void

PlotWindow.imageUpdated(ImagePlus imp)

For live plots, this method is called if the source image content is changed.

ResultsTable

Overlay.measure(ImagePlus imp)

Measures the ROIs in this overlay on the specified image and returns the results as a ResultsTable.

static GenericDialog

NonBlockingGenericDialog.newDialog(String title, ImagePlus imp)

Obsolete, replaced by GUI.newNonBlockingDialog(String,ImagePlus).

static GenericDialog

GUI.newNonBlockingDialog(String title, ImagePlus imp)

Returns a new NonBlockingGenericDialog with the given title if Prefs.nonBlockingFilterDialogs is 'true' and 'imp' is displayed, otherwise returns a GenericDialog.

void

HistogramWindow.roiModified(ImagePlus img, int id)

void

PlotWindow.roiModified(ImagePlus img, int id)

For live plots, update the plot if the ROI of the source image changes

void

RoiListener.roiModified(ImagePlus imp, int id)

void

ImageWindow.setImage(ImagePlus imp2)

void

Roi.setImage(ImagePlus imp)

Sets the ImagePlus associated with this ROI.

void

Plot.setImagePlus(ImagePlus imp)

Sets the ImagePlus where the plot will be displayed.

void

Roi.setPosition(ImagePlus imp)

Sets the position of this ROI based on the stack position of the specified image.

static boolean

GUI.showCompositeAdvisory(ImagePlus imp, String title)

void

HistogramWindow.showHistogram(ImagePlus imp, int bins)

Draws the histogram using the specified title and number of bins.

void

HistogramWindow.showHistogram(ImagePlus imp, int bins, double histMin, double histMax)

Draws the histogram using the specified title, number of bins and histogram range.

void

HistogramWindow.showHistogram(ImagePlus srcImp, ImageStatistics stats)

Draws the histogram using the specified title and ImageStatistics.

void

Roi.startPaste(ImagePlus clipboard)

void

ImageWindow.updateImage(ImagePlus imp)

static void

Overlay.updateTableOverlay(ImagePlus imp, int first, int last, int tableSize)

Updates overlays created by the particle analyzer after rows are deleted from the Results table.

Constructors in ij.gui with parameters of type ImagePlus

Modifier

Constructor

Description

Arrow(int sx, int sy, ImagePlus imp)

EllipseRoi(int sx, int sy, ImagePlus imp)

FreehandRoi(int sx, int sy, ImagePlus imp)

HistogramWindow(HistogramPlot plot, ImagePlus srcImp)

HistogramWindow(ImagePlus imp)

Displays a histogram using the title "Histogram of ImageName".

HistogramWindow(String title, ImagePlus imp, int bins)

Displays a histogram using the specified title and number of bins.

HistogramWindow(String title, ImagePlus imp, int bins, double histMin, double histMax)

Displays a histogram using the specified title, number of bins and histogram range.

HistogramWindow(String title, ImagePlus imp, int bins, double histMin, double histMax, int yMax)

Displays a histogram using the specified title, number of bins, histogram range and yMax.

HistogramWindow(String title, ImagePlus imp, ImageStatistics stats)

Displays a histogram using the specified title and ImageStatistics.

ImageCanvas(ImagePlus imp)

ImagePanel(ImagePlus img)

ImageWindow(ImagePlus imp)

ImageWindow(ImagePlus imp, ImageCanvas ic)

Line(int ox1, int oy1, int ox2, int oy2, ImagePlus imp)

Deprecated.
replaced by Line(int, int, int, int)

Line(int sx, int sy, ImagePlus imp)

Starts the process of creating a new user-generated straight line selection.

OvalRoi(int x, int y, int width, int height, ImagePlus imp)

Deprecated.

OvalRoi(int x, int y, ImagePlus imp)

Starts the process of creating a user-defined OvalRoi.

Plot(ImagePlus imp, InputStream is)

Constructs a new plot from an InputStream and closes the stream.

PlotCanvas(ImagePlus imp)

Creates a new PlotCanvas

PlotWindow(ImagePlus imp, Plot plot)

Creates a PlotWindow from a given ImagePlus with a Plot object.

PointRoi(int sx, int sy, ImagePlus imp)

Creates a new PointRoi using the specified screen coordinates.

PolygonRoi(int[] xPoints, int[] yPoints, int nPoints, ImagePlus imp, int type)

Deprecated.

PolygonRoi(int sx, int sy, ImagePlus imp)

Starts the process of creating a new user-generated polygon or polyline ROI.

ProfilePlot(ImagePlus imp)

ProfilePlot(ImagePlus imp, boolean averageHorizontally)

Roi(int x, int y, int width, int height, ImagePlus imp)

Deprecated.

Roi(int sx, int sy, ImagePlus imp)

Starts the process of creating a user-defined rectangular Roi, where sx and sy are the starting screen coordinates.

Roi(int sx, int sy, ImagePlus imp, int cornerDiameter)

Starts the process of creating a user-defined rectangular Roi, where sx and sy are the starting screen coordinates.

RotatedRectRoi(int sx, int sy, ImagePlus imp)

StackWindow(ImagePlus imp)

StackWindow(ImagePlus imp, ImageCanvas ic)

TextRoi(int x, int y, ImagePlus imp)
Uses of ImagePlus in ij.io

Methods in ij.io that return ImagePlus

Modifier and Type

Method

Description

ImagePlus

Opener.deserialize(byte[] bytes)

Deserialize a byte array that was serialized using the FileSaver.serialize().

ImagePlus

FileOpener.open(boolean show)

Obsolete, replaced by openImage() and open().

ImagePlus

FileOpener.openImage()

Opens the image and returns it has an ImagePlus object.

ImagePlus

Opener.openImage(String path)

Opens, but does not display, the specified image file and returns an ImagePlus object object if successful, or returns null if the file is not in a supported format or is not found.

ImagePlus

Opener.openImage(String path, int n)

Open the nth image of the specified tiff stack.

ImagePlus

Opener.openImage(String directory, String name)

Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image.

ImagePlus

Opener.openTempImage(String directory, String name)

ImagePlus

Opener.openTextImage(String dir, String name)

Opens the specified text file as a float image.

ImagePlus

Opener.openTiff(InputStream in, String name)

Attempts to open the specified inputStream as a TIFF, returning an ImagePlus object if successful.

ImagePlus

Opener.openTiff(String path, int n)

Opens the nth image of the specified TIFF stack.

ImagePlus

Opener.openTiff(String directory, String name)

Attempts to open the specified file as a tiff.

ImagePlus

Opener.openTiffStack(FileInfo[] info)

Attemps to open a tiff file as a stack.

ImagePlus

Opener.openURL(String url)

Attempts to open the specified url as a tiff, zip compressed tiff, dicom, gif or jpeg.

static ImagePlus

Opener.openUsingBioFormats(String path)

Opens an image file using the Bio-Formats plugin.

static ImagePlus

Opener.openUsingImageIO(String path)

ImagePlus

Opener.openWithHandleExtraFileTypes(String path, int[] fileTypes)

ImagePlus

Opener.openZip(String path)

Opens a single TIFF or DICOM contained in a ZIP archive, or a ZIPed collection of ".roi" files created by the ROI manager.

Methods in ij.io with parameters of type ImagePlus

Modifier and Type

Method

Description

static void

Opener.convertGrayJpegTo8Bits(ImagePlus imp)

Converts the specified RGB image to 8-bits if the 3 channels are identical.

static String

Opener.getLoadRate(double time, ImagePlus imp)

static byte[][]

FileSaver.getOverlay(ImagePlus imp)

static String

SaveDialog.getPath(ImagePlus imp, String extension)

static boolean

FileSaver.okForFits(ImagePlus imp)

static boolean

FileSaver.okForGif(ImagePlus imp)

static boolean

FileSaver.okForJpeg(ImagePlus imp)

Always returns true.

void

FileOpener.revertToSaved(ImagePlus imp)

Restores the original version of the specified image.

void

FileSaver.saveDisplayRangesAndLuts(ImagePlus imp, FileInfo fi)

Constructors in ij.io with parameters of type ImagePlus

Modifier

Constructor

Description

FileSaver(ImagePlus imp)

Constructs a FileSaver from an ImagePlus.
Uses of ImagePlus in ij.macro

Methods in ij.macro that return ImagePlus

Modifier and Type

Method

Description

static ImagePlus

Interpreter.getBatchModeImage(int id)

static ImagePlus

Interpreter.getLastBatchModeImage()

ImagePlus

Interpreter.runBatchMacro(String macro, ImagePlus imp)

Runs Process/Batch/ macros.

Methods in ij.macro with parameters of type ImagePlus

Modifier and Type

Method

Description

static void

Interpreter.activateImage(ImagePlus imp)

static void

Interpreter.addBatchModeImage(ImagePlus imp)

static void

Interpreter.removeBatchModeImage(ImagePlus imp)

ImagePlus

Interpreter.runBatchMacro(String macro, ImagePlus imp)

Runs Process/Batch/ macros.
Uses of ImagePlus in ij.measure

Methods in ij.measure with parameters of type ImagePlus

Modifier and Type

Method

Description

void

Calibration.setImage(ImagePlus imp)

Disables the density calibation if the specified image has a differenent bit depth.

void

ResultsTable.update(int measurements, ImagePlus imp, Roi roi)

Constructors in ij.measure with parameters of type ImagePlus

Modifier

Constructor

Description

Calibration(ImagePlus imp)

Constructs a new Calibration object using the default values.
Uses of ImagePlus in ij.plugin

Subclasses of ImagePlus in ij.plugin

Modifier and Type

Class

Description

class

BMP_Reader

This plugin reads BMP files.

class

DICOM

This plugin decodes DICOM files.

class

FITS_Reader

Opens and displays FITS images.

class

GIF_Reader

This plugin opens GIFs and Animated GIFs.

class

LutLoader

Opens NIH Image look-up tables (LUTs), 768 byte binary LUTs (256 reds, 256 greens and 256 blues), LUTs in text format, or generates the LUT specified by the string argument passed to the run() method.

class

PGM_Reader

This plugin opens PxM format images.

Methods in ij.plugin that return ImagePlus

Modifier and Type

Method

Description

ImagePlus

ScreenGrabber.captureImage()

Captures the active image window and returns it as an ImagePlus.

ImagePlus

ScreenGrabber.captureScreen()

Captures the entire screen and returns it as an ImagePlus.

ImagePlus

Concatenator.concatenate(ImagePlus[] ims, boolean keepIms)

Concatenates two or more images or stacks.

ImagePlus

Concatenator.concatenate(ImagePlus imp1, ImagePlus imp2, boolean keep)

Concatenate two images or stacks.

ImagePlus

Concatenator.concatenateHyperstacks(ImagePlus[] images, String newTitle, boolean keep)

Obsolete, replaced by concatenate(images,keep) and Concatenator.run(images).

ImagePlus

RGBStackMerge.createComposite(int w, int h, int d, ImageStack[] stacks, boolean keep)

Deprecated; replaced by mergeChannels().

ImagePlus

Duplicator.crop(ImagePlus imp)

Returns a copy the current image or stack slice, cropped if there is a selection.

static ImagePlus

FFT.forward(ImagePlus imp)

Performs a forward FHT transform.

static ImagePlus

GelAnalyzer.getGelImage()

static ImagePlus

Orthogonal_Views.getImage()

ImagePlus

AVI_Reader.getImagePlus()

Returns the ImagePlus opened by run().

ImagePlus

ZProjector.getProjection()

Retrieve results of most recent projection operation.

ImagePlus

Profiler.getSourceImage()

ImagePlus

ZAxisProfiler.getSourceImage()

ImagePlus

Orthogonal_Views.getXZImage()

ImagePlus

Orthogonal_Views.getYZImage()

ImagePlus

GroupedZProjector.groupZProject(ImagePlus imp, int method, int groupSize)

static ImagePlus

FFT.inverse(ImagePlus imp)

Performs an inverse FHT transform.

static ImagePlus

CompositeConverter.makeComposite(ImagePlus imp)

ImagePlus

MontageMaker.makeMontage2(ImagePlus imp, int columns, int rows, double scale, int first, int last, int inc, int borderWidth, boolean labels)

Creates a montage and returns it as an ImagePlus.

static ImagePlus

SubHyperstackMaker.makeSubhyperstack(ImagePlus input, String cString, String zString, String tString)

static ImagePlus

SubHyperstackMaker.makeSubhyperstack(ImagePlus input, List<Integer> cList, List<Integer> zList, List<Integer> tList)

ImagePlus

SubstackMaker.makeSubstack(ImagePlus imp, String userInput)

static ImagePlus

RGBStackMerge.mergeChannels(ImagePlus[] images, boolean keepSourceImages)

ImagePlus

RGBStackMerge.mergeHyperstacks(ImagePlus[] images, boolean keep)

static ImagePlus

AVI_Reader.open(String path, boolean virtual)

Opens an AVI file as a stack in memory or a virtual stack.

static ImagePlus

AVI_Reader.open(String path, String options)

Opens an AVI file, where 'options' can contain 'virtual' (open as virtual stack), 'convert' (convert color images to grayscale) or 'flip' (flip vertically).

static ImagePlus

FolderOpener.open(String path)

Opens the images in the specified directory as a stack.

static ImagePlus

FolderOpener.open(String path, int width, int height, String options)

Opens the images in the specified directory as a widthxheight stack.

static ImagePlus

FolderOpener.open(String path, String options)

Opens the images in the specified directory as a stack.

static ImagePlus

Raw.open(String filePath, FileInfo fi)

Opens the image at 'filePath' using the format specified by 'fi'.

static ImagePlus

Raw.openAll(String directory, FileInfo fi)

Opens all the images in the specified directory as a stack, using the format specified by 'fi'.

static ImagePlus

Raw.openAllVirtual(String directory, FileInfo fi)

Opens all the images in the specified directory as a virtual stack, using the format specified by 'fi'.

ImagePlus

FolderOpener.openFolder(String path)

Opens the images in the specified directory as a stack.

static ImagePlus

AVI_Reader.openVirtual(String path)

Opens an AVI file as a virtual stack.

static ImagePlus

FileInfoVirtualStack.openVirtual(String path)

Opens the specified tiff file as a virtual stack.

static ImagePlus

Scaler.resize(ImagePlus imp, int dstWidth, int dstHeight, int dstDepth, String options)

Returns a scaled copy of this image or ROI, where the 'options' string can contain 'none', 'bilinear'.

ImagePlus

Slicer.reslice(ImagePlus imp)

static ImagePlus

ChannelArranger.run(ImagePlus img, int[] newOrder)

Changes the order of the channels in a hyperstack.

ImagePlus

Concatenator.run()

Displays a dialog requiring user to choose images and returns ImagePlus of concatenated images.

static ImagePlus

Concatenator.run(ImagePlus[] images)

Concatenates two or more images, stacks or hyperstacks.

static ImagePlus

Concatenator.run(ImagePlus img1, ImagePlus img2)

Concatenates two images, stacks or hyperstacks.

static ImagePlus

Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3)

Concatenates three images, stacks or hyperstacks.

static ImagePlus

Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3, ImagePlus img4)

Concatenates four images, stacks or hyperstacks.

static ImagePlus

Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3, ImagePlus img4, ImagePlus img5)

Concatenates five images, stacks or hyperstacks.

ImagePlus

Duplicator.run(ImagePlus imp)

Returns a copy of the image, stack or hyperstack contained in the specified ImagePlus.

ImagePlus

Duplicator.run(ImagePlus imp, int firstSlice, int lastSlice)

Returns a new stack containing a subrange of the specified stack.

ImagePlus

Duplicator.run(ImagePlus imp, int firstC, int lastC, int firstZ, int lastZ, int firstT, int lastT)

Returns a new hyperstack containing a possibly reduced version of the input image.

static ImagePlus

ImageCalculator.run(ImagePlus img1, ImagePlus img2, String operation)

Performs arithmetic options on two images and returns the result, where 'operation' ("add","subtract", "multiply","divide", "and", "or", "xor", "min", "max", "average", "difference" or "copy") specifies the operation.

ImagePlus

ImageCalculator.run(String operation, ImagePlus img1, ImagePlus img2)

static ImagePlus

ImagesToStack.run(ImagePlus[] images)

Converts the images in 'images' to a stack, using the default settings ("copy center" and "titles as labels").

static ImagePlus

SubstackMaker.run(ImagePlus imp, String rangeOrList)

Extracts selected slices from a stack to make a new substack.

static ImagePlus

ZProjector.run(ImagePlus imp, String method)

Performs projection on the entire stack using the specified method and returns the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".

static ImagePlus

ZProjector.run(ImagePlus imp, String method, int startSlice, int stopSlice)

Performs projection using the specified method and stack range, and returns the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".

ImagePlus

Binner.shrink(ImagePlus imp, int xshrink, int yshrink, int zshrink, int method)

static ImagePlus[]

ChannelSplitter.split(ImagePlus imp)

Splits the specified image into separate channels.

static ImagePlus

HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t)

Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite").

static ImagePlus

HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t, String mode)

Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale").

static ImagePlus

HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t, String order, String mode)

Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames.

ImagePlus

Resizer.zScale(ImagePlus imp, int newDepth, int interpolationMethod)

Methods in ij.plugin with parameters of type ImagePlus

Modifier and Type

Method

Description

static void

GaussianBlur3D.blur(ImagePlus imp, double sigmaX, double sigmaY, double sigmaZ)

void

ImageCalculator.calculate(String operation, ImagePlus img1, ImagePlus img2)

Deprecated.
replaced by run(String,ImagePlus,ImagePlus)

ImagePlus

Concatenator.concatenate(ImagePlus[] ims, boolean keepIms)

Concatenates two or more images or stacks.

ImagePlus

Concatenator.concatenate(ImagePlus imp1, ImagePlus imp2, boolean keep)

Concatenate two images or stacks.

ImagePlus

Concatenator.concatenateHyperstacks(ImagePlus[] images, String newTitle, boolean keep)

Obsolete, replaced by concatenate(images,keep) and Concatenator.run(images).

void

RGBStackConverter.convertHyperstack(ImagePlus imp, ImagePlus imp2)

void

StackEditor.convertStackToImages(ImagePlus imp)

static void

RGBStackConverter.convertToRGB(ImagePlus imp)

Converts the specified multi-channel (composite) image to RGB.

static void

Clipboard.copyToSystem(ImagePlus imp)

Copies the contents of the specified image, or selection, to the system clicpboard.

static ByteProcessor

Thresholder.createMask(ImagePlus imp)

Returns an 8-bit binary (0 and 255) threshold mask that has the same dimensions as this image.

ImagePlus

Duplicator.crop(ImagePlus imp)

Returns a copy the current image or stack slice, cropped if there is a selection.

void

FFTMath.doMath(ImagePlus imp1, ImagePlus imp2)

static void

RoiEnlarger.enlarge(ImagePlus imp, int pixels)

void

ContrastEnhancer.equalize(ImagePlus imp)

static void

FFT.filter(ImagePlus imp, ImagePlus filter)

Version of filter() that accepts an ImagePlus for the filter.

static void

FFT.filter(ImagePlus imp, ImageProcessor filter)

Does frequency domain fitering of the speciified image

void

StackReverser.flipStack(ImagePlus imp)

static ImagePlus

FFT.forward(ImagePlus imp)

Performs a forward FHT transform.

static ImageStack

ChannelSplitter.getChannel(ImagePlus imp, int c)

Returns, as an ImageStack, the specified channel, where 'c' must be greater than zero and less than or equal to the number of channels in the image.

String

ImageInfo.getExifData(ImagePlus imp)

static String[]

FITS_Writer.getHeader(ImagePlus img)

Extracts the original FITS header from the Properties object of the ImagePlus image (or from the current slice label in the case of an ImageStack) and returns it as an array of String objects representing each card.

String

ImageInfo.getImageInfo(ImagePlus imp)

static Plot

ZAxisProfiler.getPlot(ImagePlus imp)

Returns a Plot of the selection mean gray value versus slice number.

static Plot

ZAxisProfiler.getPlot(ImagePlus imp, String options)

Returns a Plot of the selection mean versus slice number for the specified hyperstack, where 'options' can be "time" or "z-axis".

ImagePlus

GroupedZProjector.groupZProject(ImagePlus imp, int method, int groupSize)

void

EventListener.imageClosed(ImagePlus imp)

void

Orthogonal_Views.imageClosed(ImagePlus imp)

void

EventListener.imageOpened(ImagePlus imp)

void

Orthogonal_Views.imageOpened(ImagePlus imp)

void

EventListener.imageSaved(ImagePlus imp)

void

EventListener.imageUpdated(ImagePlus imp)

void

Orthogonal_Views.imageUpdated(ImagePlus imp)

static void

Zoom.in(ImagePlus imp)

void

StackInserter.insert(ImagePlus imp1, ImagePlus imp2, int x, int y)

static ImagePlus

FFT.inverse(ImagePlus imp)

Performs an inverse FHT transform.

static boolean

Orthogonal_Views.isOrthoViewsImage(ImagePlus imp)

static void

HyperStackMaker.labelHyperstack(ImagePlus imp)

static ImagePlus

CompositeConverter.makeComposite(ImagePlus imp)

void

MontageMaker.makeMontage(ImagePlus imp)

void

MontageMaker.makeMontage(ImagePlus imp, int columns, int rows, double scale, int first, int last, int inc, int borderWidth, boolean labels)

Creates a montage and displays it.

ImagePlus

MontageMaker.makeMontage2(ImagePlus imp, int columns, int rows, double scale, int first, int last, int inc, int borderWidth, boolean labels)

Creates a montage and returns it as an ImagePlus.

static ImagePlus

SubHyperstackMaker.makeSubhyperstack(ImagePlus input, String cString, String zString, String tString)

static ImagePlus

SubHyperstackMaker.makeSubhyperstack(ImagePlus input, List<Integer> cList, List<Integer> zList, List<Integer> tList)

ImagePlus

SubstackMaker.makeSubstack(ImagePlus imp, String userInput)

static void

Zoom.maximize(ImagePlus imp)

static ImagePlus

RGBStackMerge.mergeChannels(ImagePlus[] images, boolean keepSourceImages)

ImagePlus

RGBStackMerge.mergeHyperstacks(ImagePlus[] images, boolean keep)

static void

FFT.multiply(ImagePlus imp, ImageProcessor filter)

Multiplies a Fourier domain image by a filter

static void

Zoom.out(ImagePlus imp)

static void

Scaler.record(ImagePlus imp, int w2, int h2, int d2, int method)

void

HyperStackReducer.reduce(ImagePlus imp2)

void

StackReducer.reduceHyperstack(ImagePlus imp, int factor, boolean reduceSlices)

void

StackReducer.reduceStack(ImagePlus imp, int factor)

static ImagePlus

Scaler.resize(ImagePlus imp, int dstWidth, int dstHeight, int dstDepth, String options)

Returns a scaled copy of this image or ROI, where the 'options' string can contain 'none', 'bilinear'.

ImagePlus

Slicer.reslice(ImagePlus imp)

void

EventListener.roiModified(ImagePlus img, int id)

ImageProcessor

Straightener.rotateLine(ImagePlus imp, int width)

static ImagePlus

ChannelArranger.run(ImagePlus img, int[] newOrder)

Changes the order of the channels in a hyperstack.

static ImagePlus

Concatenator.run(ImagePlus[] images)

Concatenates two or more images, stacks or hyperstacks.

static ImagePlus

Concatenator.run(ImagePlus img1, ImagePlus img2)

Concatenates two images, stacks or hyperstacks.

static ImagePlus

Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3)

Concatenates three images, stacks or hyperstacks.

static ImagePlus

Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3, ImagePlus img4)

Concatenates four images, stacks or hyperstacks.

static ImagePlus

Concatenator.run(ImagePlus img1, ImagePlus img2, ImagePlus img3, ImagePlus img4, ImagePlus img5)

Concatenates five images, stacks or hyperstacks.

ImagePlus

Duplicator.run(ImagePlus imp)

Returns a copy of the image, stack or hyperstack contained in the specified ImagePlus.

ImagePlus

Duplicator.run(ImagePlus imp, int firstSlice, int lastSlice)

Returns a new stack containing a subrange of the specified stack.

ImagePlus

Duplicator.run(ImagePlus imp, int firstC, int lastC, int firstZ, int lastZ, int firstT, int lastT)

Returns a new hyperstack containing a possibly reduced version of the input image.

static ImagePlus

ImageCalculator.run(ImagePlus img1, ImagePlus img2, String operation)

Performs arithmetic options on two images and returns the result, where 'operation' ("add","subtract", "multiply","divide", "and", "or", "xor", "min", "max", "average", "difference" or "copy") specifies the operation.

ImagePlus

ImageCalculator.run(String operation, ImagePlus img1, ImagePlus img2)

static ImagePlus

ImagesToStack.run(ImagePlus[] images)

Converts the images in 'images' to a stack, using the default settings ("copy center" and "titles as labels").

static ImagePlus

SubstackMaker.run(ImagePlus imp, String rangeOrList)

Extracts selected slices from a stack to make a new substack.

static ImagePlus

ZProjector.run(ImagePlus imp, String method)

Performs projection on the entire stack using the specified method and returns the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".

static ImagePlus

ZProjector.run(ImagePlus imp, String method, int startSlice, int stopSlice)

Performs projection using the specified method and stack range, and returns the result, where 'method' is "avg", "min", "max", "sum", "sd" or "median".

void

ZProjector.run2(ImagePlus img, String arg)

static String

GifWriter.save(ImagePlus imp, String path)

Saves the specified image in GIF format or as an animated GIF if the image is a stack.

static String

JpegWriter.save(ImagePlus imp, String path, int quality)

Thread-safe method.

static void

StackWriter.save(ImagePlus imp, String directoryPath, String options)

Saves the specified image as a sequence of images.

static void

Zoom.set(ImagePlus imp, double magnification)

static void

Zoom.set(ImagePlus imp, double magnification, int x, int y)

void

ZProjector.setImage(ImagePlus imp)

Explicitly set image to be projected.

double

RoiEnlarger.showDialog(ImagePlus imp, double pixels)

ImagePlus

Binner.shrink(ImagePlus imp, int xshrink, int yshrink, int zshrink, int method)

void

HyperStackConverter.shuffle(ImagePlus imp, int order)

Changes the dimension order of a 4D or 5D stack from the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to the XYCZT order used by ImageJ.

static ImagePlus[]

ChannelSplitter.split(ImagePlus imp)

Splits the specified image into separate channels.

ImageProcessor

Straightener.straighten(ImagePlus imp, Roi roi, int width)

ImageProcessor

Straightener.straightenLine(ImagePlus imp, int width)

ImageProcessor

Straightener.straightenLine(ImagePlus imp, Line line, int width)

ImageStack

Straightener.straightenStack(ImagePlus imp, Roi roi, int width)

void

ContrastEnhancer.stretchHistogram(ImagePlus imp, double saturated)

static ImagePlus

HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t)

Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite").

static ImagePlus

HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t, String mode)

Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale").

static ImagePlus

HyperStackConverter.toHyperStack(ImagePlus imp, int c, int z, int t, String order, String mode)

Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames.

static void

Zoom.toSelection(ImagePlus imp)

static void

HyperStackConverter.toStack(ImagePlus imp)

Converts the specified hyperstack into a stack.

static void

Zoom.unzoom(ImagePlus imp)

void

PNG_Writer.writeImage(ImagePlus imp, String path, int transparentIndex)

ImagePlus

Resizer.zScale(ImagePlus imp, int newDepth, int interpolationMethod)

Constructors in ij.plugin with parameters of type ImagePlus

Modifier

Constructor

Description

HyperStackReducer(ImagePlus imp)

Constructs a HyperStackReducer using the specified source image.

ZProjector(ImagePlus imp)

Construction of ZProjector with image to be projected.
Uses of ImagePlus in ij.plugin.filter

Fields in ij.plugin.filter declared as ImagePlus

Modifier and Type

Field

Description

protected ImagePlus

ParticleAnalyzer.imp

Methods in ij.plugin.filter that return ImagePlus

Modifier and Type

Method

Description

ImagePlus

Duplicater.duplicateStack(ImagePlus imp, String newTitle)

Deprecated.

ImagePlus

Duplicater.duplicateSubstack(ImagePlus imp, String newTitle, int first, int last)

Deprecated.

ImagePlus

ParticleAnalyzer.getOutputImage()

Returns the "Outlines", "Masks", "Elipses" or "Count Masks" image, or null if "Nothing" is selected in the "Show:" menu.

static ImagePlus

Analyzer.getRedirectImage(ImagePlus cimp)

Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog, or null if "None" is selected, the image was not found or the image is not the same size as currentImage.

Methods in ij.plugin.filter with parameters of type ImagePlus

Modifier and Type

Method

Description

void

LineGraphAnalyzer.analyze(ImagePlus imp)

Uses extracts a set of coordinate pairs from a digitized line graph.

boolean

ParticleAnalyzer.analyze(ImagePlus imp)

Performs particle analysis on the current slice of the specified image.

boolean

ParticleAnalyzer.analyze(ImagePlus imp, ImageProcessor ip)

Performs particle analysis on the specified ImagePlus and ImageProcessor.

void

Calibrator.calibrate(ImagePlus imp)

Calibrate an image with the function type defined previously.

void

Filler.drawLabel(ImagePlus imp, ImageProcessor ip, int count, Rectangle r)

ImagePlus

Duplicater.duplicateStack(ImagePlus imp, String newTitle)

Deprecated.

ImagePlus

Duplicater.duplicateSubstack(ImagePlus imp, String newTitle, int first, int last)

Deprecated.

String

Info.getImageInfo(ImagePlus imp, ImageProcessor ip)

Deprecated.

static ImagePlus

Analyzer.getRedirectImage(ImagePlus cimp)

Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog, or null if "None" is selected, the image was not found or the image is not the same size as currentImage.

static Roi

ThresholdToSelection.run(ImagePlus imp)

Returns a selection created from the thresholded pixels in the specified image, or null if there are no thresholded pixels.

void

RoiWriter.saveRoi(ImagePlus imp)

void

XYWriter.saveXYCoordinates(ImagePlus imp)

static void

Analyzer.setRedirectImage(ImagePlus imp)

Set the "Redirect To" image.

int

Analyzer.setup(String arg, ImagePlus imp)

int

AVI_Writer.setup(String arg, ImagePlus imp)

int

BackgroundSubtracter.setup(String arg, ImagePlus imp)

int

Benchmark.setup(String arg, ImagePlus imp)

int

Binary.setup(String arg, ImagePlus imp)

int

Calibrator.setup(String arg, ImagePlus imp)

int

Convolver.setup(String arg, ImagePlus imp)

int

Duplicater.setup(String arg, ImagePlus imp)

Deprecated.

int

EDM.setup(String arg, ImagePlus imp)

Prepare for processing; also called at the very end with argument 'final' to show any newly created output image.

int

FFTCustomFilter.setup(String arg, ImagePlus imp)

int

FFTFilter.setup(String arg, ImagePlus imp)

int

Filler.setup(String arg, ImagePlus imp)

int

Filters.setup(String arg, ImagePlus imp)

int

FractalBoxCounter.setup(String arg, ImagePlus imp)

int

GaussianBlur.setup(String arg, ImagePlus imp)

Method to return types supported

int

ImageMath.setup(String arg, ImagePlus imp)

int

ImageProperties.setup(String arg, ImagePlus imp)

int

Info.setup(String arg, ImagePlus imp)

Deprecated.

int

LineGraphAnalyzer.setup(String arg, ImagePlus imp)

int

LutApplier.setup(String arg, ImagePlus imp)

int

LutViewer.setup(String arg, ImagePlus imp)

int

MaximumFinder.setup(String arg, ImagePlus imp)

Method to return types supported

int

ParticleAnalyzer.setup(String arg, ImagePlus imp)

int

PlugInFilter.setup(String arg, ImagePlus imp)

This method is called once when the filter is loaded.

int

Printer.setup(String arg, ImagePlus imp)

int

RankFilters.setup(String arg, ImagePlus imp)

Setup of the PlugInFilter.

int

RGBStackSplitter.setup(String arg, ImagePlus imp)

int

RoiWriter.setup(String arg, ImagePlus imp)

int

Rotator.setup(String arg, ImagePlus imp)

int

SaltAndPepper.setup(String arg, ImagePlus imp)

int

ScaleDialog.setup(String arg, ImagePlus imp)

int

Shadows.setup(String arg, ImagePlus imp)

int

StackLabeler.setup(String arg, ImagePlus imp)

int

ThresholdToSelection.setup(String arg, ImagePlus imp)

int

Transformer.setup(String arg, ImagePlus imp)

int

Translator.setup(String arg, ImagePlus imp)

int

UnsharpMask.setup(String arg, ImagePlus imp)

Method to return types supported

int

Writer.setup(String arg, ImagePlus imp)

Deprecated.

int

XYWriter.setup(String arg, ImagePlus imp)

int

BackgroundSubtracter.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

int

Binary.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

boolean

Calibrator.showDialog(ImagePlus imp)

int

Convolver.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

int

EDM.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

Called by the PlugInFilterRunner after setup.

int

ExtendedPlugInFilter.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

This method is called after setup(arg, imp) unless the DONE flag has been set.

int

GaussianBlur.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

Ask the user for the parameters

int

ImageMath.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

int

MaximumFinder.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

int

RankFilters.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

int

Rotator.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

int

StackLabeler.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

int

Translator.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

int

UnsharpMask.showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr)

Ask the user for the parameters

void

RGBStackSplitter.split(ImagePlus imp)

Deprecated; replaced by ij.plugin.ChannelSplitter.

void

AVI_Writer.writeImage(ImagePlus imp, String path, int compression, int jpegQuality)

Writes an ImagePlus (stack) as AVI file.

Constructors in ij.plugin.filter with parameters of type ImagePlus

Modifier

Constructor

Description

Analyzer(ImagePlus imp)

Constructs a new Analyzer using the specified ImagePlus object and the current measurement options and default results table.

Analyzer(ImagePlus imp, int measurements, ResultsTable rt)

Construct a new Analyzer using an ImagePlus object and private measurement options and a ResultsTable.

Analyzer(ImagePlus imp, ResultsTable rt)

Construct a new Analyzer using an ImagePlus object and a ResultsTable.
Uses of ImagePlus in ij.plugin.frame

Methods in ij.plugin.frame that return ImagePlus

Modifier and Type

Method

Description

ImagePlus

SyncWindows.getImageFromVector(int n)

Get ImagePlus from Windows-Vector vwins.

Methods in ij.plugin.frame with parameters of type ImagePlus

Modifier and Type

Method

Description

void

RoiManager.add(ImagePlus imp, Roi roi, int n)

Adds the specified ROI to the list.

int

SyncWindows.getIndexOfImage(ImagePlus image)

Get index of "image" in vector of synchronized windows, if image is in vector.

void

Recorder.imageClosed(ImagePlus imp)

void

SyncWindows.imageClosed(ImagePlus imp)

Implementation of ImageListener interface: update window list, if image is opened or closed

void

ThresholdAdjuster.imageClosed(ImagePlus imp)

void

Recorder.imageOpened(ImagePlus imp)

void

SyncWindows.imageOpened(ImagePlus imp)

Implementation of ImageListener interface: update window list, if image is opened or closed

void

ThresholdAdjuster.imageOpened(ImagePlus imp)

void

Recorder.imageUpdated(ImagePlus imp)

void

SyncWindows.imageUpdated(ImagePlus imp)

void

ThresholdAdjuster.imageUpdated(ImagePlus imp)

void

RoiManager.moveRoisToOverlay(ImagePlus imp)

Moves all the ROIs to the specified image's overlay.

ResultsTable

RoiManager.multiMeasure(ImagePlus imp)

This method measures the selected ROIs, or all ROIs if none are selected, on all the slices of a stack and returns a ResultsTable arranged with one row per slice.

static ResultsTable

RoiManager.multiMeasure(ImagePlus imp, Roi[] rois, boolean appendResults)

boolean

RoiManager.runCommand(ImagePlus imp, String cmd)

Using the specified image, runs the ROI Manager "Add", "Add invalid input: '&' Draw", "Update", "Delete", "Measure", "Draw", "Show All", "Show None", "Fill", "Deselect", "Select All", "Combine", "AND", "XOR", "Split", "Sort" or "Multi Measure" command.

void

RoiManager.select(ImagePlus imp, int index)

Assigns the ROI at the specified index to 'imp'.

void

RoiManager.selectAndMakeVisible(ImagePlus imp, int index)

void

SyncWindows.setCursor(ImagePlus imp, Roi cursor)

void

RoiManager.setEditMode(ImagePlus imp, boolean editMode)
Uses of ImagePlus in ij.plugin.tool

Methods in ij.plugin.tool with parameters of type ImagePlus

Modifier and Type

Method

Description

void

PlugInTool.mouseClicked(ImagePlus imp, MouseEvent e)

void

ArrowTool.mouseDragged(ImagePlus imp, MouseEvent e)

void

BrushTool.mouseDragged(ImagePlus imp, MouseEvent e)

void

OverlayBrushTool.mouseDragged(ImagePlus imp, MouseEvent e)

void

PixelInspectionTool.mouseDragged(ImagePlus imp, MouseEvent e)

void

PlugInTool.mouseDragged(ImagePlus imp, MouseEvent e)

void

RoiRotationTool.mouseDragged(ImagePlus imp, MouseEvent e)

void

PlugInTool.mouseEntered(ImagePlus imp, MouseEvent e)

void

PlugInTool.mouseExited(ImagePlus imp, MouseEvent e)

void

PlugInTool.mouseMoved(ImagePlus imp, MouseEvent e)

void

ArrowTool.mousePressed(ImagePlus imp, MouseEvent e)

void

BrushTool.mousePressed(ImagePlus imp, MouseEvent e)

void

OverlayBrushTool.mousePressed(ImagePlus imp, MouseEvent e)

void

PixelInspectionTool.mousePressed(ImagePlus imp, MouseEvent e)

void

PlugInTool.mousePressed(ImagePlus imp, MouseEvent e)

void

RoiRotationTool.mousePressed(ImagePlus imp, MouseEvent e)

void

ArrowTool.mouseReleased(ImagePlus imp, MouseEvent e)

void

BrushTool.mouseReleased(ImagePlus imp, MouseEvent e)

void

OverlayBrushTool.mouseReleased(ImagePlus imp, MouseEvent e)

void

PlugInTool.mouseReleased(ImagePlus imp, MouseEvent e)

void

RoiRotationTool.mouseReleased(ImagePlus imp, MouseEvent e)
Uses of ImagePlus in ij.process

Methods in ij.process that return ImagePlus

Modifier and Type

Method

Description

ImagePlus

ColorSpaceConverter.LabToRGB(ImagePlus img)

Converts a Lab stack into an RGB image.

ImagePlus

ColorSpaceConverter.RGBToLab(ImagePlus img)

Converts an RGB image into a Lab stack.

Methods in ij.process with parameters of type ImagePlus

Modifier and Type

Method

Description

static void

ImageConverter.convertAndCalibrate(ImagePlus imp, String type)

ImagePlus

ColorSpaceConverter.LabToRGB(ImagePlus img)

Converts a Lab stack into an RGB image.

ImagePlus

ColorSpaceConverter.RGBToLab(ImagePlus img)

Converts an RGB image into a Lab stack.

void

BinaryInterpolator.run(ImagePlus image, Roi[] rois)

Constructors in ij.process with parameters of type ImagePlus

Modifier

Constructor

Description

ImageConverter(ImagePlus imp)

Constructs an ImageConverter based on an ImagePlus object.

StackConverter(ImagePlus imp)

StackStatistics(ImagePlus imp)

Creates a StackStatistics object from a stack, using 256 histogram bins and the entire stack pixel value range.

StackStatistics(ImagePlus imp, int nBins, double xMin, double xMax)

Creates a StackStatistics object from a stack, using the specified histogram bin count and x-axis range (pixel value tange).
Uses of ImagePlus in ij.util

Methods in ij.util with parameters of type ImagePlus

Modifier and Type

Method

Description

static String

DicomTools.getTag(ImagePlus imp, String id)

Returns the value (as a string) of the specified DICOM tag id (in the form "0018,0050") of the specified image or stack slice.

Uses of Classij.ImagePlus

Uses of ImagePlus in ij

Uses of ImagePlus in ij.gui

Uses of ImagePlus in ij.io

Uses of ImagePlus in ij.macro

Uses of ImagePlus in ij.measure

Uses of ImagePlus in ij.plugin

Uses of ImagePlus in ij.plugin.filter

Uses of ImagePlus in ij.plugin.frame

Uses of ImagePlus in ij.plugin.tool

Uses of ImagePlus in ij.process

Uses of ImagePlus in ij.util

Uses of Class
ij.ImagePlus